If you are familiar with the commandline then you may prefer to install Jalview via conda instead (see instructions above). Then: open a terminal and type: conda config -add channels defaults conda config -add channels bioconda conda config -add channels conda-forge conda install jalview Installing on OSX We recommend you install the jalview desktop via the signed OSX disk images: or (Works on Sierra if you download Java separately). Install via Conda A Jalview conda package is also available, thanks to the great folk over at To install via conda, first download for your platform. You can download the Jalview application installation on its own, and optionally download a copy of the Java Virtual Machine which actually runs Jalview.
It will work out which operating system you have, and present you with the package it considers most appropriate. InstallAnywhere is a Java program installation system.
